petra_edr()predicts longer trajectories of a target in ecological dynamic regimes.
MPD() quantifies the accuracy of predicted trajectories returned by petra_edr().
plot.PETRA() represents predicted trajectories returned by petra_edr() and
the trajectories of the reference EDR in a state space.
vignette("Predicted_trajectories"): describes how to predict ecological
trajectories from EDRs.
amplitude() calculates the amplitude of disturbed trajectories from RETRA and PETRA objects.
recovery() calculates the recovery towards reference trajectories from RETRA and PETRA objects.
net_change() calculates the net change of disturbed trajectories from RETRA and PETRA objects.
plot() and plot_edr(): axes are not constrained to "Axis X".
vignette("EDR_framework"): new plots showing ecological succession.
vignette("Resilience"): new Section 2.
Packages in Suggests are used conditionally in examples, tests, and vignettes.
state_to_trajectory(): method = "projection" considers the nearest states in reference to calculate dissimilarities between the target_states and reference. method = "mixed" returns the same values than method = "projection".plot.RETRA() correctly represents trajectories when states are not in order.
plot_edr() does not print [[i]]NULL to the console.
retra_edr(): fixed error when !is.null(Dim).
Fixed errors due to incompatibilities with ecotraj 1.1.1
plot_edr() represents EDR trajectories and states according to pre-defined
colors or variablesresistance() calculates resistance to disturbances.
amplitude() calculates the amplitude of disturbed trajectories.
recovery() calculates the recovery towards reference trajectories.
net_change() calculates the net change of disturbed trajectories.
state_to_trajectory() defines the position of a state with respect to a trajectory.
EDR_data now includes an abundance matrix for disturbed communities.
New vignette("Resilience") which describes how ecological resilience can be assessed.
dEve() error now does not refer to any reference trajectory.
define_retra() returns error if certain characters are used in trajectories.
dist_edr() can be used when states are not in order.