Package: ecoregime 0.2.0

Martina Sánchez-Pinillos

ecoregime: Analysis of Ecological Dynamic Regimes

A toolbox for implementing the Ecological Dynamic Regime framework (Sánchez-Pinillos et al., 2023 <doi:10.1002/ecm.1589>) to characterize and compare groups of ecological trajectories in multidimensional spaces defined by state variables. The package includes the RETRA-EDR algorithm to identify representative trajectories, functions to generate, summarize, and visualize representative trajectories, and several metrics to quantify the distribution and heterogeneity of trajectories in an ecological dynamic regime and quantify the dissimilarity between two or more ecological dynamic regimes. The package also includes a set of functions to assess ecological resilience based on ecological dynamic regimes (Sánchez-Pinillos et al., 2024 <doi:10.1016/j.biocon.2023.110409>).

Authors:Martina Sánchez-Pinillos [aut, cre, cph]

ecoregime_0.2.0.tar.gz
ecoregime_0.2.0.zip(r-4.5)ecoregime_0.2.0.zip(r-4.4)ecoregime_0.2.0.zip(r-4.3)
ecoregime_0.2.0.tgz(r-4.5-any)ecoregime_0.2.0.tgz(r-4.4-any)ecoregime_0.2.0.tgz(r-4.3-any)
ecoregime_0.2.0.tar.gz(r-4.5-noble)ecoregime_0.2.0.tar.gz(r-4.4-noble)
ecoregime_0.2.0.tgz(r-4.4-emscripten)ecoregime_0.2.0.tgz(r-4.3-emscripten)
ecoregime.pdf |ecoregime.html
ecoregime/json (API)
NEWS

# Install 'ecoregime' in R:
install.packages('ecoregime', repos = c('https://mspinillos.r-universe.dev', 'https://cloud.r-project.org'))

Bug tracker:https://github.com/mspinillos/ecoregime/issues

Pkgdown site:https://mspinillos.github.io

Datasets:
  • EDR_data - Ecological Dynamic Regime data

On CRAN:

Conda:

5.32 score 7 stars 8 scripts 276 downloads 11 exports 122 dependencies

Last updated 11 months agofrom:af520a1906. Checks:9 OK. Indexed: yes.

TargetResultLatest binary
Doc / VignettesOKMar 16 2025
R-4.5-winOKMar 16 2025
R-4.5-macOKMar 16 2025
R-4.5-linuxOKMar 16 2025
R-4.4-winOKMar 16 2025
R-4.4-macOKMar 16 2025
R-4.4-linuxOKMar 16 2025
R-4.3-winOKMar 16 2025
R-4.3-macOKMar 16 2025

Exports:amplitudedBDdDisdefine_retradEvedist_edrnet_changerecoveryresistanceretra_edrstate_to_trajectory

Dependencies:apebackportsbase64encbitbit64bootbroombslibcachemcheckmateclassclicliprclustercodetoolscolorspacecpp11crayondata.tabledigestdoParalleldplyre1071ecotrajellipseevaluatefansifarverfastmapfontawesomeforcatsforeachforeignFormulafsgdatagenericsggplot2glmnetgluegridExtragtablegtoolshavenhighrHmischmshtmlTablehtmltoolshtmlwidgetsisobanditeratorsjomojquerylibjsonliteKendallknitrlabelinglatticelifecyclelme4magrittrMASSMatrixmemoisemgcvmicemimeminqamitmlmunsellnlmenloptrnnetnnlsnumDerivordinalpanpillarpkgconfigplotrixpolynomprettyunitsprogressproxypurrrR6rappdirsrbibutilsRColorBrewerRcppRcppEigenRdpackreadrreformulasrlangrmarkdownrpartrstudioapisassscalesshapesmacofstringistringrsurvivaltibbletidyrtidyselecttinytextzdbucminfutf8vctrsviridisviridisLitevroomweightswithrwordcloudxfunyaml

Ecological Dynamic Regime framework

Rendered fromEDR_framework.Rmdusingknitr::rmarkdownon Mar 16 2025.

Last update: 2024-04-06
Started: 2023-01-01

Ecological resilience to pulse disturbances

Rendered fromResilience.Rmdusingknitr::rmarkdownon Mar 16 2025.

Last update: 2024-04-06
Started: 2024-04-04