Package: ecoregime 0.2.0
Martina Sánchez-Pinillos
ecoregime: Analysis of Ecological Dynamic Regimes
A toolbox for implementing the Ecological Dynamic Regime framework (Sánchez-Pinillos et al., 2023 <doi:10.1002/ecm.1589>) to characterize and compare groups of ecological trajectories in multidimensional spaces defined by state variables. The package includes the RETRA-EDR algorithm to identify representative trajectories, functions to generate, summarize, and visualize representative trajectories, and several metrics to quantify the distribution and heterogeneity of trajectories in an ecological dynamic regime and quantify the dissimilarity between two or more ecological dynamic regimes. The package also includes a set of functions to assess ecological resilience based on ecological dynamic regimes (Sánchez-Pinillos et al., 2024 <doi:10.1016/j.biocon.2023.110409>).
Authors:
ecoregime_0.2.0.tar.gz
ecoregime_0.2.0.zip(r-4.5)ecoregime_0.2.0.zip(r-4.4)ecoregime_0.2.0.zip(r-4.3)
ecoregime_0.2.0.tgz(r-4.4-any)ecoregime_0.2.0.tgz(r-4.3-any)
ecoregime_0.2.0.tar.gz(r-4.5-noble)ecoregime_0.2.0.tar.gz(r-4.4-noble)
ecoregime_0.2.0.tgz(r-4.4-emscripten)ecoregime_0.2.0.tgz(r-4.3-emscripten)
ecoregime.pdf |ecoregime.html✨
ecoregime/json (API)
NEWS
| # Install 'ecoregime' in R: |
| install.packages('ecoregime', repos = c('https://mspinillos.r-universe.dev', 'https://cloud.r-project.org')) |
Bug tracker:https://github.com/mspinillos/ecoregime/issues
- EDR_data - Ecological Dynamic Regime data
Last updated 5 months agofrom:af520a1906. Checks:OK: 7. Indexed: yes.
| Target | Result | Date |
|---|---|---|
| Doc / Vignettes | OK | Sep 17 2024 |
| R-4.5-win | OK | Sep 17 2024 |
| R-4.5-linux | OK | Sep 17 2024 |
| R-4.4-win | OK | Sep 17 2024 |
| R-4.4-mac | OK | Sep 17 2024 |
| R-4.3-win | OK | Sep 17 2024 |
| R-4.3-mac | OK | Sep 17 2024 |
Exports:amplitudedBDdDisdefine_retradEvedist_edrnet_changerecoveryresistanceretra_edrstate_to_trajectory
Dependencies:abindapebackportsbase64encbitbit64bootbroombslibcachemcandisccarcarDatacheckmateclassclicliprclustercodetoolscolorspacecowplotcpp11crayondata.tableDerivdigestdoBydoParalleldplyre1071ecotrajellipseevaluatefansifarverfastmapfontawesomeforcatsforeachforeignFormulafsgdatagenericsggplot2glmnetgluegridExtragtablegtoolshavenheplotshighrHmischmshtmlTablehtmltoolshtmlwidgetsisobanditeratorsjomojquerylibjsonliteKendallknitrlabelinglatticelifecyclelme4magrittrMASSMatrixMatrixModelsmemoisemgcvmicemicrobenchmarkmimeminqamitmlmodelrmunsellnlmenloptrnnetnnlsnumDerivordinalpanpbkrtestpillarpkgconfigplotrixpolynomprettyunitsprogressproxypurrrquantregR6rappdirsRColorBrewerRcppRcppEigenreadrrglrlangrmarkdownrpartrstudioapisassscalesshapesmacofSparseMstringistringrsurvivaltibbletidyrtidyselecttinytextzdbucminfutf8vctrsviridisviridisLitevroomweightswithrwordcloudxfunyaml
Readme and manuals
Help Manual
| Help page | Topics |
|---|---|
| Define representative trajectories from trajectory features | define_retra |
| Metrics of trajectory deviation with respect to a reference trajectory | amplitude deviation_metrics net_change recovery resistance |
| Dissimilarities between Ecological Dynamic Regimes | dist_edr |
| Ecological Dynamic Regime data | EDR_data |
| Metrics of Ecological Dynamic Regimes | dBD dDis dEve EDR_metrics |
| Plot representative trajectories of Ecological Dynamic Regimes | plot.RETRA |
| Representative trajectories in Ecological Dynamic Regimes (RETRA-EDR) | retra_edr |
| Position of a state with respect to a trajectory | state_to_trajectory |
| Summarize representative trajectories | summary.RETRA |